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Image Search Results
Journal:
Article Title: Phylogenetic Analysis of Salmonella , Shigella , and Escherichia coli Strains on the Basis of the gyrB Gene Sequence
doi: 10.1128/JCM.40.8.2779-2785.2002
Figure Lengend Snippet: 16S rRNA gene sequence similarity and divergence a of each pair for E. coli, Salmonella, Shigella, Enterobacter, Klebsiella , and Yersinia calculated by DNASTAR
Article Snippet: The mean sequence obtained from direct sequencing of PCR products was used for the following strains: E. coli (ATCC 25922), S. enterica serovar Enteritidis (isolate), S. enterica serovar Paratyphi A (isolate), S. enterica serovar Paratyphi B (ATCC 8759), S. enterica serovar Typhi (isolate), S. enterica serovar Typhimurium (ATCC 14028), S. boydii (isolate), S. flexneri (ATCC 12022), S. sonnei (ATCC 11060), Y. enterocolitica (ATCC 23715), E. aerogenes (ATCC 13048), E. cloacae (ATCC 13047), K. oxytoca (isolate), and K. pneumoniae (isolate). table ft1 table-wrap mode="anchored" t5 TABLE 2. caption a7 Strain no. Strain name % Similarity with strain no. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 1 E. coli ATCC25922 91.3 91.0 91.0 91.1 90.9 98.0 97.8 98.1 89.2 89.2 89.2 89.3 80.4 2 S. enterica serovar Enteritidis P1 9.2 98.2 98.1 97.9 98.0 91.4 91.1 91.2 89.7 89.1 89.5 90.4 79.4 3 S. enterica serovar Paratyphi A P 1 9.5 1.8 98.5 97.9 98.0 90.9 90.7 90.9 89.8 88.9 89.6 90.2 79.2 4 S. enterica serovar Paratyphi B ATCC 8759 9.5 1.9 1.5 98.9 99.2 90.9 91.1 90.9 90.3 89.1 89.7 90.6 79.3 5 S. enterica serovar Typhi P1 9.4 2.2 2.1 1.1 99.0 90.7 90.9 90.7 90.2 88.8 89.7 90.7 79.8 6 S. enterica serovar Typhimurium ATCC 14028 9.6 2.0 1.9 0.8 1.0 90.9 91.1 90.9 90.3 89.5 89.5 90.8 79.7 7 S. boydii P1 2.0 9.1 9.6 9.6 9.9 9.7 98.7 99.1 89.5 89.2 89.0 89.1 80.4 8 S. flexneri ATCC 12022 2.3 9.5 10.0 9.5 9.7 9.5 1.3 98.4 89.5 89.2 89.3 89.0 80.8 9 S. sonnei ATCC 11060 1.9 9.4 9.6 9.6 9.9 9.7 0.9 1.6 89.5 89.4 88.9 89.2 80.5 10 E. aerogenes ATCC 13048 11.7 11.1 10.8 10.4 10.4 10.3 11.4 11.3 11.4 88.3 91.3 93.4 79.2 11
Techniques: Sequencing
Journal:
Article Title: Phylogenetic Analysis of Salmonella , Shigella , and Escherichia coli Strains on the Basis of the gyrB Gene Sequence
doi: 10.1128/JCM.40.8.2779-2785.2002
Figure Lengend Snippet: Phylogenetic tree based on the nucleotide sequences of 16S rRNA genes. The 16S rRNA sequences were adjusted to 1,435 bases, and the tree was constructed by the neighbor-joining method, using the computer program MegAlign (DNASTAR Inc.). The scale indicates the percentage of base difference (percent divergence). The sequence data for phylogenetic analysis were taken from the GenBank nucleotide sequence database for the following strains: E. coli (ATCC 25922), S. enterica serovar Enteritidis (SE22), S. enterica serovar Paratyphi A (ATCC 54388), S. enterica serovar Paratyphi B, S. enterica serovar Typhi (ATCC 19430), S. enterica serovar Typhimurium (ATCC 13311), S. boydii (ATCC 9027), S. flexneri (ATCC 29903), S. sonnei (ATCC 25931), Y. enterocolitica (ATCC 9610), E. aerogenes (NCTC10006T), E. cloacae (ATCC 13047T), K. oxytoca (ATCC 13182T), and K. pneumoniae (ATCC 13883).
Article Snippet: The mean sequence obtained from direct sequencing of PCR products was used for the following strains: E. coli (ATCC 25922), S. enterica serovar Enteritidis (isolate), S. enterica serovar Paratyphi A (isolate), S. enterica serovar Paratyphi B (ATCC 8759), S. enterica serovar Typhi (isolate), S. enterica serovar Typhimurium (ATCC 14028), S. boydii (isolate), S. flexneri (ATCC 12022), S. sonnei (ATCC 11060), Y. enterocolitica (ATCC 23715), E. aerogenes (ATCC 13048), E. cloacae (ATCC 13047), K. oxytoca (isolate), and K. pneumoniae (isolate). table ft1 table-wrap mode="anchored" t5 TABLE 2. caption a7 Strain no. Strain name % Similarity with strain no. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 1 E. coli ATCC25922 91.3 91.0 91.0 91.1 90.9 98.0 97.8 98.1 89.2 89.2 89.2 89.3 80.4 2 S. enterica serovar Enteritidis P1 9.2 98.2 98.1 97.9 98.0 91.4 91.1 91.2 89.7 89.1 89.5 90.4 79.4 3 S. enterica serovar Paratyphi A P 1 9.5 1.8 98.5 97.9 98.0 90.9 90.7 90.9 89.8 88.9 89.6 90.2 79.2 4 S. enterica serovar Paratyphi B ATCC 8759 9.5 1.9 1.5 98.9 99.2 90.9 91.1 90.9 90.3 89.1 89.7 90.6 79.3 5 S. enterica serovar Typhi P1 9.4 2.2 2.1 1.1 99.0 90.7 90.9 90.7 90.2 88.8 89.7 90.7 79.8 6 S. enterica serovar Typhimurium ATCC 14028 9.6 2.0 1.9 0.8 1.0 90.9 91.1 90.9 90.3 89.5 89.5 90.8 79.7 7 S. boydii P1 2.0 9.1 9.6 9.6 9.9 9.7 98.7 99.1 89.5 89.2 89.0 89.1 80.4 8 S. flexneri ATCC 12022 2.3 9.5 10.0 9.5 9.7 9.5 1.3 98.4 89.5 89.2 89.3 89.0 80.8 9 S. sonnei ATCC 11060 1.9 9.4 9.6 9.6 9.9 9.7 0.9 1.6 89.5 89.4 88.9 89.2 80.5 10 E. aerogenes ATCC 13048 11.7 11.1 10.8 10.4 10.4 10.3 11.4 11.3 11.4 88.3 91.3 93.4 79.2 11
Techniques: Construct, Sequencing
Journal:
Article Title: Phylogenetic Analysis of Salmonella , Shigella , and Escherichia coli Strains on the Basis of the gyrB Gene Sequence
doi: 10.1128/JCM.40.8.2779-2785.2002
Figure Lengend Snippet: gyrB gene sequence similarity and divergence a of each pair for E. coli, Salmonella, Shigella, Enterobacter, Klebsiella , and Yersinia calculated by DNASTAR
Article Snippet: The mean sequence obtained from direct sequencing of PCR products was used for the following strains: E. coli (ATCC 25922), S. enterica serovar Enteritidis (isolate), S. enterica serovar Paratyphi A (isolate), S. enterica serovar Paratyphi B (ATCC 8759), S. enterica serovar Typhi (isolate), S. enterica serovar Typhimurium (ATCC 14028), S. boydii (isolate), S. flexneri (ATCC 12022), S. sonnei (ATCC 11060), Y. enterocolitica (ATCC 23715), E. aerogenes (ATCC 13048), E. cloacae (ATCC 13047), K. oxytoca (isolate), and K. pneumoniae (isolate). table ft1 table-wrap mode="anchored" t5 TABLE 2. caption a7 Strain no. Strain name % Similarity with strain no. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 1 E. coli ATCC25922 91.3 91.0 91.0 91.1 90.9 98.0 97.8 98.1 89.2 89.2 89.2 89.3 80.4 2 S. enterica serovar Enteritidis P1 9.2 98.2 98.1 97.9 98.0 91.4 91.1 91.2 89.7 89.1 89.5 90.4 79.4 3 S. enterica serovar Paratyphi A P 1 9.5 1.8 98.5 97.9 98.0 90.9 90.7 90.9 89.8 88.9 89.6 90.2 79.2 4 S. enterica serovar Paratyphi B ATCC 8759 9.5 1.9 1.5 98.9 99.2 90.9 91.1 90.9 90.3 89.1 89.7 90.6 79.3 5 S. enterica serovar Typhi P1 9.4 2.2 2.1 1.1 99.0 90.7 90.9 90.7 90.2 88.8 89.7 90.7 79.8 6 S. enterica serovar Typhimurium ATCC 14028 9.6 2.0 1.9 0.8 1.0 90.9 91.1 90.9 90.3 89.5 89.5 90.8 79.7 7 S. boydii P1 2.0 9.1 9.6 9.6 9.9 9.7 98.7 99.1 89.5 89.2 89.0 89.1 80.4 8 S. flexneri ATCC 12022 2.3 9.5 10.0 9.5 9.7 9.5 1.3 98.4 89.5 89.2 89.3 89.0 80.8 9 S. sonnei ATCC 11060 1.9 9.4 9.6 9.6 9.9 9.7 0.9 1.6 89.5 89.4 88.9 89.2 80.5 10 E. aerogenes ATCC 13048 11.7 11.1 10.8 10.4 10.4 10.3 11.4 11.3 11.4 88.3 91.3 93.4 79.2 11
Techniques: Sequencing